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[/] [openrisc/] [trunk/] [gnu-dev/] [or1k-gcc/] [gcc/] [testsuite/] [go.test/] [test/] [bench/] [shootout/] [k-nucleotide-parallel.go] - Blame information for rev 700

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Line No. Rev Author Line
1 700 jeremybenn
/*
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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    * Redistributions of source code must retain the above copyright
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    notice, this list of conditions and the following disclaimer.
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    * Redistributions in binary form must reproduce the above copyright
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    notice, this list of conditions and the following disclaimer in the
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    documentation and/or other materials provided with the distribution.
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    * Neither the name of "The Computer Language Benchmarks Game" nor the
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    name of "The Computer Language Shootout Benchmarks" nor the names of
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    its contributors may be used to endorse or promote products derived
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    from this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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POSSIBILITY OF SUCH DAMAGE.
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*/
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/* The Computer Language Benchmarks Game
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 * http://shootout.alioth.debian.org/
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 *
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 * contributed by The Go Authors.
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 */
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package main
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import (
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        "bufio"
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        "bytes"
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        "fmt"
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        "io/ioutil"
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        "os"
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        "runtime"
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        "sort"
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)
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func count(data string, n int) map[string]int {
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        counts := make(map[string]int)
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        top := len(data) - n
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        for i := 0; i <= top; i++ {
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                s := data[i : i+n]
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                counts[s]++
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        }
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        return counts
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}
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func countOne(data string, s string) int {
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        return count(data, len(s))[s]
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}
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type kNuc struct {
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        name  string
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        count int
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}
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type kNucArray []kNuc
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func (kn kNucArray) Len() int      { return len(kn) }
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func (kn kNucArray) Swap(i, j int) { kn[i], kn[j] = kn[j], kn[i] }
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func (kn kNucArray) Less(i, j int) bool {
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        if kn[i].count == kn[j].count {
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                return kn[i].name > kn[j].name // sort down
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        }
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        return kn[i].count > kn[j].count
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}
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func sortedArray(m map[string]int) kNucArray {
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        kn := make(kNucArray, len(m))
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        i := 0
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        for k, v := range m {
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                kn[i] = kNuc{k, v}
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                i++
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        }
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        sort.Sort(kn)
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        return kn
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}
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func printKnucs(a kNucArray) {
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        sum := 0
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        for _, kn := range a {
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                sum += kn.count
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        }
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        for _, kn := range a {
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                fmt.Printf("%s %.3f\n", kn.name, 100*float64(kn.count)/float64(sum))
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        }
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        fmt.Print("\n")
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}
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func main() {
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        runtime.GOMAXPROCS(4)
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        in := bufio.NewReader(os.Stdin)
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        three := []byte(">THREE ")
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        for {
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                line, err := in.ReadSlice('\n')
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                if err != nil {
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                        fmt.Fprintln(os.Stderr, "ReadLine err:", err)
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                        os.Exit(2)
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                }
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                if line[0] == '>' && bytes.Equal(line[0:len(three)], three) {
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                        break
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                }
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        }
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        data, err := ioutil.ReadAll(in)
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        if err != nil {
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                fmt.Fprintln(os.Stderr, "ReadAll err:", err)
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                os.Exit(2)
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        }
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        // delete the newlines and convert to upper case
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        j := 0
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        for i := 0; i < len(data); i++ {
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                if data[i] != '\n' {
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                        data[j] = data[i] &^ ' ' // upper case
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                        j++
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                }
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        }
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        str := string(data[0:j])
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        var arr1, arr2 kNucArray
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        countsdone := make(chan bool)
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        go func() {
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                arr1 = sortedArray(count(str, 1))
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                countsdone <- true
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        }()
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        go func() {
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                arr2 = sortedArray(count(str, 2))
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                countsdone <- true
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        }()
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        interests := []string{"GGT", "GGTA", "GGTATT", "GGTATTTTAATT", "GGTATTTTAATTTATAGT"}
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        results := make([]chan string, len(interests))
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        for i, s := range interests {
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                ch := make(chan string)
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                results[i] = ch
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                go func(result chan string, ss string) {
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                        result <- fmt.Sprintf("%d %s\n", countOne(str, ss), ss)
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                }(ch, s)
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        }
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        <-countsdone
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        <-countsdone
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        printKnucs(arr1)
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        printKnucs(arr2)
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        for _, rc := range results {
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                fmt.Print(<-rc)
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        }
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}

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